Does anyone remember an animated movie possibly in the about fairies I their anti hero being angry bear a scene where are making puppet out of large doll?

You may be referring to the animated film "", released in 1999. In the film, the main antagonist is Queen Titania, who is not a bear but rather a queen of the fairies. There is a scene where the fairies, led by Puck, create a puppet out of a scarecrow to distract and deceive Queen Titania and her loyal followers.