* "Pull Me Under"
* "Another Day"
* "Under a Glass Moon"
* "Surrounded"
* "Metropolis - Part I: "The Miracle and the Sleeper""
Awake (1994)
* "6:00"
* "Caught in a Web"
* "Lie"
* "The Mirror"
* "Space-Dye Vest"
Scenes from a Memory (1999)
* "The Glass Prison"
* "Strange Déjà Vu"
* "Through My Words"
* "Fatal Tragedy"
* "The Dance of Eternity"
Six Degrees of Inner Turbulence (2002)
* "The Glass Prison"
* "Blind Faith"
* "Misunderstood"
* "The Great Debate"
* "Disappear"
Train of Thought (2003)
* "As I Am"
* "This Dying Soul"
* "Endless Sacrifice"
* "Honor Thy Father"
* "In the Name of God"
Octavarium (2005)
* "The Root of All Evil"
* "The Answer Lies Within"
* "These Walls"
* "I Walk Beside You"
* "Octavarium"
Systematic Chaos (2007)
* "In the Presence of Enemies, Pt. 1"
* "Forsaken"
* "Constant Motion"
* "The Dark Eternal Night"
* "Repentance"
Black Clouds & Silver Linings (2009)
* "A Nightmare to Remember"
* "The Shattered Fortress"
* "The Count of Tuscany"
* "A Rite of Passage"
* "Beneath the Surface"
A Dramatic Turn of Events (2011)
* "On the Backs of Angels"
* "Build Me Up, Break Me Down"
* "Lost Not Forgotten"
* "This Is the Life"
* "Bridges in the Sky"
Dream Theater (2013)
* "False Awakening Suite"
* "The Enemy Inside"
* "The Looking Glass"
* "Enigma Machine"
* "The Bigger Picture"
The Astonishing (2016)
* "Dystopian Overture"
* "The Gift of Music"
* "A New Beginning"
* "Our New World"
* "The Road to Revolution"
Distance over Time (2019)
* "Untethered Angel"
* "Paralyzed"
* "Fall into the Light"
* "Barstool Warrior"
* "S2N"
A View from the Top (2021)
* "The Alien"
* "Answering the Call"
* "Invisible Monster"
* "Sleeping Giant"
* "Transcending Time"