- The Garvan-Olin Medal from the American Chemical Society (1983): This prestigious award recognizes outstanding achievements in the field of chemistry.
- The Tolman Medal from the Southern California Section of the American Chemical Society (1985): This award is given to an individual who has made significant contributions to the field of chemistry.
- The American Association for the Advancement of Science (AAAS) Fellows Award (1987): This award is bestowed upon individuals who have made outstanding contributions to the advancement of science.
- The National Organization for Women (NOW) Woman of the Year Award (1990): This award recognizes the significant contributions of women in various fields.
- The L'Oréal-UNESCO For Women in Science Awards (2005): Marie Daly was one of the five recipients of this award, which recognizes exceptional achievements by women in scientific research.
- The National Medal of Science (2005): This is one of the highest honors bestowed upon scientists in the United States, recognizing their outstanding contributions to the field.
Marie M. Daly's accomplishments and impact in the field of chemistry have been widely acknowledged and celebrated, and her awards serve as a testament to her exceptional achievements and contributions.