- *History of the Presbyterian Church in the United States* (1839)
- *The Constitutional History of the Presbyterian Church in the United States of America* (1840)
- *Systematic Theology* (1840-1841)
- *The Confession of Faith of the Presbyterian Church in the United States of America: with Explanatory Notes* (1841)
- *The Government and Discipline of the Presbyterian Church in the United States of America: with Notes* (1842)
- *The Form of Government of the Presbyterian Church in the United States of America: with Notes* (1843)
- *The Book of Common Prayer of the Presbyterian Church in the United States of America: with Notes* (1844)
- *The Psalms of David, with Notes, Explanatory and Practical* (1846)
- *A Commentary on the Confession of Faith of the Presbyterian Church in the United States of America* (1851)
- *A Commentary on the Shorter Catechism of the Presbyterian Church in the United States of America* (1852)
Articles:
- "The Presbyterian Church in the United States of America" in *The American Presbyterian Review* (1861)
- "The Constitutional History of the Presbyterian Church in the United States of America" in *The American Presbyterian Review* (1862)
- "The Government and Discipline of the Presbyterian Church in the United States of America" in *The American Presbyterian Review* (1863)
- "The Form of Government of the Presbyterian Church in the United States of America" in *The American Presbyterian Review* (1864)
- "The Book of Common Prayer of the Presbyterian Church in the United States of America" in *The American Presbyterian Review* (1865)
- "The Psalms of David, with Notes, Explanatory and Practical" in *The American Presbyterian Review* (1866)
- "A Commentary on the Confession of Faith of the Presbyterian Church in the United States of America" in *The American Presbyterian Review* (1867)
- "A Commentary on the Shorter Catechism of the Presbyterian Church in the United States of America" in *The American Presbyterian Review* (1868)
Other Writings:
- *Sermons on Various Occasions* (1840)
- *Lectures on Systematic Theology* (1841)
- *Letters on the Polity of the Presbyterian Church* (1842)
- *A Defence of the Presbyterian Church in the United States of America* (1843)
- *A Vindication of the Presbyterian Church in the United States of America* (1844)
- *A Reply to the Attacks of Dr. Samuel Miller on the Presbyterian Church in the United States of America* (1845)
- *A Refutation of the Charges of Dr. Samuel Miller against the Presbyterian Church in the United States of America* (1846)
- *A Review of the Recent Controversy between the Old School and New School Presbyterian Churches* (1847)
- *A History of the Presbyterian Church in the United States of America from the Earliest Times to the Present Day* (1848)
- *A Compendium of the History of the Presbyterian Church in the United States of America* (1849)