1. Dialga will release the Time Gears he had absorbed, restoring the flow of time to normal.
2. The player and their partner will return to Treasure Town.
3. Dialga will appear and explain to the player and their partner that his actions were necessary to prevent a greater catastrophe. He reveals that a force known as the "Dark Matter" has been manipulating time and causing various distortions and glitches in the world.
4. Dialga charges the player and their partner with the task of stopping Dark Matter.
5. After this conversation, the story will continue with the player and their partner exploring dungeons, battling Pokemon, and recruiting new team members as they work to uncover the truth behind Dark Matter and put a stop to its nefarious plans.