Here's what happens next:
* Route 4: You'll encounter trainers and wild Pokemon, and you might find a TM for Flash.
* Route 5: You'll meet Bill and help him with his Pokemon before continuing to Violet City.
* Violet City: You'll face the next gym leader, Falkner.
So, while you might be thinking of a specific gym after Misty, the journey continues on, with more challenges and exciting encounters ahead.