- Inverted Totalitarism: When Democracy Holds Hostage to Unjust Authority (2022)
- The Republic of Silence (2018)
- Who is afraid of the state? (2013)
- The Israeli New Right: Anatomy of a Political Movement (2009)
- Why Israelis Love Arabs (2008)
- Beyond Racism (2006)
- In Pursuit of Identity (2005)
- This Land is our Land: the Jewish Foundation of Israel (2004)
- The Jews of Muslim Spain, Vol. 1: At Home in Two Cultures (2003)
- The Jews of Muslim Spain, Vol 2: The Golden Age (2004)
- The Jews of Muslim Spain, Vol. 3: Jews and Christians (2006)
- Fundamentalist Islam: Terrorist or Not? (1995)
Edited books
- The Arab World and Israel (1998)
- Middle Eastern Minorities and Diasporas (2005)
- Muslims in Europe: Questioning Integration (2007)
- Beyond Racism: Europe and the Middle East (2010)
- The Middle East and Globalization (2012)
- The Arab Spring: From Dictatorship to Democracy? (2013)
- Muslims in the West and the Challenge of Multiculturalism (2014)
- The Challenges of Political Islamism in Europe: Radicalism and Integration (2016)
- Radical Islam: A Multi-Dimensional Threat to Europe (2017)
Articles
- "The Palestinian National Movement and the Idea of Palestine" (1981)
- "Between Autonomy and Assimilation: The Dilemmas of European Islam" (2004)
- "The Arab Spring: A View from the West" (2012)
- "Europe's Arab Spring: A View from the East" (2012)
- "The Roots of Antisemitism" (2014)
- "The Myth of Radical Islam" (2015)
- "The Future of the Israeli-Palestinian Conflict" (2016)
- "The Rise of the Far Right in Europe: A Challenge to Democracy" (2017)
- "The Future of Europe: A Time of Crisis and Opportunity" (2018)
- "The Challenges of Globalization: A View from the Middle East" (2019)