His other novels include:
* The Death Gate Cycle (1990-1994)
* The Book of the Black Earth (1995)
* The Book of the White Rose (1996)
* The Book of the Red Sun (1997)
* The Void (2000)
* The Sphere (2001)
* The Horizon (2002)
* The Veil (2003)
* The Divide (2005)
* The Ring (2007)
* The Wall (2008)
His short stories include:
* "The Last of the Winnebagoes" (1987)
* "The Shape of Things" (1989)
* "The Hunter's Moon" (1991)
* "The Shadow of the Storm" (1992)
* "The Well of Darkness" (1993)
* "The Doom of Dragonstar" (1994)
* "The Fate of the Gods" (1995)
* "The End of Eternity" (1996)
* "The Day the Earth Stood Still" (1997)
* "The Last Question" (1998)
His collections include:
* *William E. Waters: In the Balance* (1991)
* *William E. Waters: The Last of the Winnebagoes and Other Stories* (1993)
* *William E. Waters: The Shape of Things and Other Stories* (1995)
* *William E. Waters: The Hunter's Moon and Other Stories* (1997)
* *William E. Waters: The Shadow of the Storm and Other Stories* (1999)
Waters has also written several books for young adults, including:
* The Lost Lands (2000-2003)
* The Shadow of the Gods (2005)
* The Last of the Elves (2007)
* The Rise of the Dark Lord (2009)
* The Battle of the Titans (2011)
* The Dawn of the Ancients (2013)
* The Fall of Atlantis (2015)
Waters has won numerous awards for his work, including the World Fantasy Award for Best Novel for Tiamat's Wrath, and the Locus Award for Best Fantasy Novel for The Crystal Shard. He is a member of the Science Fiction and Fantasy Writers of America and the Horror Writers Association.