- "Mathematics & Computers: Fear No More!" (2004)
- "Beginning Perl for Bioinformatics" (2004)
- "Perl Tutorial: Mastering the Language of Bioinformatics" (2005)
- "Practical Bioinformatics Computing: A Tutorial for Windows or Mac Users" (2005)
- "Linux Bioinformatics for Beginners: Learning to Play by the Rules" (2006)
- "Perl Programming for Medicine, Bioinformatics, and Neuroscience: Creating Fast, Portable, Platform-Independent Programs" (2006)
- "Windows Forensic Analysis Toolkit" (2007)
- "Programming Perl: Advanced Topics" (2008)
- "The Official Ubuntu Book: Unleash the Power of Linux" (2009)
- "The Joy of Perl: An Insider's Guide to Mastering Perl" (2012)
- "Introducing Windows PowerShell: A Guide for Windows Administrators" (2012)
- "Bioinformatics Programming Using Python" (2013)
- "Perl for Biological Sequences: A Beginner's Guide" (2014)
- "The R Software: A Guide to Data Analysis, Graphics, and Computing" (2015)
- "Practical R Programming for Bioinformatics: A Tutorial for Getting Started" (2016)
- "The Practical Guide to Ubuntu Linux: A Beginner's Guide" (2017)
- "Beginning R for Bioinformatics" (2018)
- "Beginning Linux Programming: A Hands-On Guide for Absolute Beginners" (2019)
- "Perl Programming: A Comprehensive Guide for Beginners" (2020)
- "Practical R Programming for Bioinformatics, 2nd Edition: A Tutorial for Getting Started" (2021)
Articles
- "Using R for Bioinformatics" (2013)
- "Perl Programming for Beginners" (2014)
- "Bioinformatics Programming Using Python" (2014)
- "The R Software: A Guide to Data Analysis, Graphics, and Computing" (2015)
- "Practical R Programming for Bioinformatics: A Tutorial for Getting Started" (2016)
- "The Practical Guide to Ubuntu Linux: A Beginner's Guide" (2017)
- "Beginning R for Bioinformatics" (2018)
- "Beginning Linux Programming: A Hands-On Guide for Absolute Beginners" (2019)
- "Perl Programming: A Comprehensive Guide for Beginners" (2020)
- "Practical R Programming for Bioinformatics, 2nd Edition: A Tutorial for Getting Started" (2021)